PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01548.1.g00090.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 368aa    MW: 39270.1 Da    PI: 4.373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01548.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19120171156
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   ++++GVr ++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g+
  Zpz_sc01548.1.g00090.1.am.mk 120 PRFRGVRKRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRGA 171
                                   689*******.**********88.....55*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-28120177No hitNo description
PfamPF008471.3E-11120170IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-20121178IPR016177DNA-binding domain
SMARTSM003803.1E-33121184IPR001471AP2/ERF domain
PROSITE profilePS5103222.669121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-28121178IPR001471AP2/ERF domain
PRINTSPR003675.0E-10122133IPR001471AP2/ERF domain
PRINTSPR003675.0E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEDEEMFVAV RRTEHVELVT TRAVSVDSAA SKDAGPGPRT VRVFCDDYDA TDSSGDEDDD  60
DAYALAAARR RVKRYVQEVR LEPAAAKDSP AAAKPSSTKA RLALPVSGRK RKDDGPGGEP  120
RFRGVRKRPW GKYAAEIRDP WRRVRVWLGT FDTAEEAAKV YDSAAIQLRG ADATTNFGQV  180
APDDADADRF TVQTPAPAAA PAASSKNNAS SSSATSSYDS GQESSHVAAA ASPTSVLRSF  240
PPSAEDTGAA CAKKSTYTKP GGALPPSVAE TGESSGVFGC PFSDYVSLSS GDEFPPVVTD  300
FDSLFGDFPE PPLDFLAELP DEVPLFPVCD ERQQQTSSSS SAAKWQQVDD LFQDITDLFQ  360
IDPLPAVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-17122177662ATERF1
2gcc_A1e-17122177662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424212e-69EU942421.1 Zea mays clone 1496106 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.11e-112PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A096SCY71e-107A0A096SCY7_MAIZE; Uncharacterized protein
STRINGGRMZM2G142179_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-29cytokinin response factor 2